Liverpool Skyline

Department of Applied Mathematics

Dr Ivo Siekmann

Dr Ivo Siekmann

Publications

Journal article

Bengfort M, Siekmann I, Malchow H. 2018. Invasive competition with Fokker-Planck diffusion and noise Ecological Complexity, 34 :134-138 >DOI

Gawthrop PJ, Siekmann I, Kameneva T, Saha S, Ibbotson MR, Crampin EJ. 2017. Bond graph modelling of chemoelectrical energy transduction IET SYSTEMS BIOLOGY, 11 :127-138 >DOI >Link

Siekmann I. 2017. An applied mathematician's perspective on Rosennean complexity Ecological Complexity, >DOI

Siekmann I, Bengfort M, Malchow H. 2017. Coexistence of competitors mediated by nonlinear noise EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, 226 :2157-2170 >DOI >Link

Siekmann I, Malchow H. 2016. Fighting Enemies and Noise: Competition of Residents and Invaders in a Stochastically Fluctuating Environment Mathematical Modelling of Natural Phenomena, 11 :137-157 >DOI >Link

Siekmann I, Fackrell M, Crampin EJ, Taylor P. 2016. Modelling modal gating of ion channels with hierarchical Markov models PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 472 >DOI >Link

Siekmann I. 2015. Bifurcation analysis of individual-based models in population dynamics ECOLOGICAL COMPLEXITY, 21 :177-184 >DOI >Link

Rajagopal V, Bass G, Walker CG, Crossman DJ, Petzer A, Hickey A, Siekmann I, Hoshijima M, Ellisman MH, Crampin EJ, Soeller C. 2015. Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes PLOS COMPUTATIONAL BIOLOGY, 11 >DOI >Link

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: Ultra-fast transient absorption data analysis software International Journal of Nanotechnology, 11 :601-609 >DOI

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: ultra-fast transient absorption data analysis software INTERNATIONAL JOURNAL OF NANOTECHNOLOGY, 11 :601-609 >DOI >Link

Siekmann I, Sneyd J, Crampin EJ. 2014. Statistical analysis of modal gating in ion channels PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 470 >DOI >Link

Siekmann I. 2013. On competition in ecology, epidemiology and eco-epidemiology ECOLOGICAL COMPLEXITY, 14 :166-179 >DOI >Link

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Kinetic Model for Type I and II IP3R Accounting for Mode Changes BIOPHYSICAL JOURNAL, 103 :658-668 >DOI >Link

Siekmann I, Sneyd J, Crampin EJ. 2012. MCMC Can Detect Nonidentifiable Models BIOPHYSICAL JOURNAL, 103 :2275-2286 >DOI >Link

Siekmann I, Wagner LE, Yule D, Fox C, Bryant D, Crampin EJ, Sneyd J. 2011. MCMC Estimation of Markov Models for Ion Channels BIOPHYSICAL JOURNAL, 100 :1919-1929 >DOI >Link

Siekmann I, Malchow H, Venturino E. 2010. On competition of predators and prey infection ECOLOGICAL COMPLEXITY, 7 :446-457 >DOI >Link

Siekmann I, Malchow H. 2008. Local Collapses in the Truscott-Brindley Model MATHEMATICAL MODELLING OF NATURAL PHENOMENA, 3 :114-130 >DOI >Link

Siekmann I, Malchow H, Venturino E. 2008. Predation may defeat spatial spread of infection Journal of Biological Dynamics, 2 :40-54 >DOI

Siekmann I, Malchow H, Venturino E. 2008. An extension of the Beretta-Kuang model of viral diseases MATHEMATICAL BIOSCIENCES AND ENGINEERING, 5 :549-565 >Link

Siekmann I, Cao P, Sneyd J, Crampin EJ. Data-driven modelling of the inositol trisphosphate receptor (IPR) and its role in calcium induced calcium release (CICR) >Link

Siekmann I, Malchow H. Competition of residents and invaders in a variable environment: Response to enemies and dangerous noise >Link

Siekmann I, Bengfort M, Malchow H. Invasion patterns in competitive systems >Link

Conference publication

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Park/Drive Model for the Inositol-Trisphosphate Receptor (IPR) BIOPHYSICAL JOURNAL, 56th Annual Meeting of the Biophysical-Society 102 :110A-110A >DOI >Link