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Department of Applied Mathematics

Dr Ivo Siekmann

Dr Ivo Siekmann

Telephone: 0151 231 2092

ORCID

Publications

Journal article

Siekmann I, Bjelosevic S, Landman K, Monagle P, Ignjatovic V, Crampin EJ. 2019. Mathematical modelling indicates that lower activity of the haemostatic system in neonates is primarily due to lower prothrombin concentration Scientific Reports, 9 DOI Author Url Publisher Url Public Url

Bengfort M, Siekmann I, Malchow H. 2018. Invasive competition with Fokker-Planck diffusion and noise Ecological Complexity, 34 :134-138 DOI Author Url Publisher Url Public Url

Gawthrop PJ, Siekmann I, Kameneva T, Saha S, Ibbotson MR, Crampin EJ. 2017. Bond graph modelling of chemoelectrical energy transduction IET SYSTEMS BIOLOGY, 11 :127-138 DOI Author Url Public Url

Siekmann I. 2017. An applied mathematician's perspective on Rosennean complexity Ecological Complexity, DOI Author Url Publisher Url Public Url

Siekmann I, Bengfort M, Malchow H. 2017. Coexistence of competitors mediated by nonlinear noise EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, 226 :2157-2170 DOI Author Url Public Url

Siekmann I, Fackrell M, Crampin EJ, Taylor P. 2016. Modelling modal gating of ion channels with hierarchical Markov models PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 472 DOI Author Url Publisher Url Public Url

Siekmann I, Malchow H. 2016. Fighting Enemies and Noise: Competition of Residents and Invaders in a Stochastically Fluctuating Environment Mathematical Modelling of Natural Phenomena, 11 :137-157 DOI Author Url Public Url

Rajagopal V, Bass G, Walker CG, Crossman DJ, Petzer A, Hickey A, Siekmann I, Hoshijima M, Ellisman MH, Crampin EJ, Soeller C. 2015. Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes PLOS COMPUTATIONAL BIOLOGY, 11 DOI Author Url Public Url

Siekmann I. 2015. Bifurcation analysis of individual-based models in population dynamics ECOLOGICAL COMPLEXITY, 21 :177-184 DOI Author Url Public Url

Siekmann I, Sneyd J, Crampin EJ. 2014. Statistical analysis of modal gating in ion channels PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 470 DOI Author Url Public Url

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: ultra-fast transient absorption data analysis software INTERNATIONAL JOURNAL OF NANOTECHNOLOGY, 11 :601-609 DOI Author Url

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: Ultra-fast transient absorption data analysis software International Journal of Nanotechnology, 11 :601-609 DOI

Siekmann I. 2013. On competition in ecology, epidemiology and eco-epidemiology ECOLOGICAL COMPLEXITY, 14 :166-179 DOI Author Url

Siekmann I, Sneyd J, Crampin EJ. 2012. MCMC Can Detect Nonidentifiable Models BIOPHYSICAL JOURNAL, 103 :2275-2286 DOI Author Url

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Kinetic Model for Type I and II IP3R Accounting for Mode Changes BIOPHYSICAL JOURNAL, 103 :658-668 DOI Author Url

Siekmann I, Wagner LE, Yule D, Fox C, Bryant D, Crampin EJ, Sneyd J. 2011. MCMC Estimation of Markov Models for Ion Channels BIOPHYSICAL JOURNAL, 100 :1919-1929 DOI Author Url

Siekmann I, Malchow H, Venturino E. 2010. On competition of predators and prey infection ECOLOGICAL COMPLEXITY, 7 :446-457 DOI Author Url

Siekmann I, Malchow H, Venturino E. 2008. An extension of the Beretta-Kuang model of viral diseases MATHEMATICAL BIOSCIENCES AND ENGINEERING, 5 :549-565 DOI Author Url

Siekmann I, Malchow H. 2008. Local Collapses in the Truscott-Brindley Model MATHEMATICAL MODELLING OF NATURAL PHENOMENA, 3 :114-130 DOI Author Url

Siekmann I, Malchow H, Venturino E. 2008. Predation may defeat spatial spread of infection Journal of Biological Dynamics, 2 :40-54 DOI Author Url

Siekmann I, Bengfort M, Malchow H. Invasion patterns in competitive systems Author Url

Siekmann I, Malchow H. Competition of residents and invaders in a variable environment: Response to enemies and dangerous noise Author Url

Siekmann I, Cao P, Sneyd J, Crampin EJ. Data-driven modelling of the inositol trisphosphate receptor (IPR) and its role in calcium induced calcium release (CICR) Author Url

Chapters

Siekmann I, Cao P, Sneyd J, Crampin EJ. 2019. Data-Driven Modelling of the Inositol Trisphosphate Receptor (IPR) and its Role in Calcium-Induced Calcium Release (CICR) de Pitta M, Berry H. Computational Glioscience :39-68 Springer. Cham 9783030008178 Author Url Publisher Url Public Url

Malchow H, Hilker FM, Siekmann I, Petrovskii SV, Medvinsky AB. Mathematical Models of Pattern Formation in Planktonic Predation-Diffusion Systems: A Review Aspects of Mathematical Modelling :1-26 Birkhäuser Basel 9783764385903 DOI

Conference publication

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Park/Drive Model for the Inositol-Trisphosphate Receptor (IPR) BIOPHYSICAL JOURNAL, 56th Annual Meeting of the Biophysical-Society 102 :110A-110A DOI Author Url